PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548326.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 84aa    MW: 9582.54 Da    PI: 9.7554
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-091559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   +l+ +a + + ++   +W  +a+ +g g++++++k ++ 
   XP_010548326.1 15 SWTAKQNKLFERALAIYDKDtpdRWQNVAKAVG-GKSAEEVKRHYE 59
                     7********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-13864IPR009057Homeodomain-like
PROSITE profilePS5129312.4211166IPR017884SANT domain
SMARTSM007178.0E-91264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-51568IPR009057Homeodomain-like
PfamPF002491.8E-71559IPR001005SANT/Myb domain
CDDcd001677.13E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASNSMSSYR SSSSSWTAKQ NKLFERALAI YDKDTPDRWQ NVAKAVGGKS AEEVKRHYEL  60
LIRDVNDIES GRYPHPNYRT SGNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-35684179RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548326.12e-57PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN05e-43RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLR0GTL08e-45R0GTL0_9BRAS; Uncharacterized protein (Fragment)
STRINGPOPTR_0005s12390.15e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-37RAD-like 1